ISI Journal Papers

Affinito, O., Andreakis, N., Caputi, L., Marino, R., Pannone, R., Sordino, P. and Procaccini, G. (2015). High connectivity and directional gene flow in European Atlantic and Mediterranean populations of Ciona intestinalis sp. A. Marine Ecology 36, 1230-1243.

Andrikou, C. and Arnone, M. I. (2015). Too many ways to make a muscle: Evolution of GRNs governing myogenesis. Zoologischer Anzeiger 256, 2-13.

Andrikou, C., Pai, C. Y., Su, Y. H. and Arnone, M. I. (2015). Logics and properties of a genetic regulatory program that drives embryonic muscle development in an echinoderm. Elife 4.

Annona, G., Holland, N. D. and D'Aniello, S. (2015). Evolution of the notochord. Evodevo 6, 30.

Arnone, M. I. and Hejnol, A. (2015). Genomics going wild: Marine sampling for studies of evolution and development. Marine Genomics 24, 119-120.

Caputi, L., Crocetta, F., Toscano, F., Sordino, P. and Cirino, P. (2015). Long-term demographic and reproductive trends in Ciona intestinalis sp A. Marine Ecology-an Evolutionary Perspective 36, 118-128.

Castellano, I., Ercolesi, E., Romano, G., Ianora, A. and Palumbo, A. (2015a). The diatom-derived aldehyde decadienal affects ERK signaling during metamorphosis of the ascidian Ciona intestinalisOpen biology 5, 140-182.

Castellano, I., Ercolesi, E., Romano, G., Ianora, A. and Palumbo, A. (2015b). The diatom-derived aldehyde decadienal affects life cycle transition in the ascidian Ciona intestinalis through nitric oxide/ERK signalling. Open Biology 5.

Costantini, M. (2015). An overview on genome organization of marine organisms. Mar Genomics 24 Pt 1, 3-9.

Costantini, S., Romano, G., Rusolo, F., Capone, F., Guerriero, E., Colonna, G., Ianora, A., Ciliberto, G. and Costantini, M. (2015). Anti-Inflammatory Effects of a Methanol Extract from the Marine Sponge Geodia cydonium on the Human Breast Cancer MCF-7 Cell Line. Mediators Inflamm 2015, 204975.

Crocetta, F., Marino, R., Cirino, P., Macina, A., Staiano, L., Esposito, R., Pezzotti, M. R., Racioppi, C., Toscano, F., De Felice, E., Locascio, A., Ristoratore, F., Spagnuolo, A., Zanetti, L., Branno, M. and Sordino, P. (2015). Mutation studies in ascidians: a review. Genesis 53, 160-9.

D'Alessandro, A., Pesce, M., Arnone, M. I., Zito, F. P., Andreozzi, P., Efficie, E., Civiletti, R., Affinito, G., Cuomo, R. and Sarnelli, G. (2015). Impact of upper gastrointestinal symptoms perception on BMI in GERD patients. Neurogastroenterology and Motility 27, 13-14.

D'Aniello, S., Delroisse, J., Valero-Gracia, A., Lowe, E. K., Byrne, M., Cannon, J. T., Halanych, K. M., Elphick, M. R., Mallefet, J., Kaul-Strehlowi, S., Lowe, C.J., Flammang, P., Ullrich-Luter, E., Wanninger, A., Arnone, M.I. (2015). Opsin evolution in the Ambulacraria. Marine Genomics 24, 177-183.

Danovaro, R., Costantini, M. and Verde, C. (2015). The marine genome: structure, regulation and evolution. Mar Genomics 24 Pt 1, 1-2.

De Luca, D., Catanese, G., Fiorito, G. and Procaccini, G. (2015). A new set of pure microsatellite loci in the common octopus Octopus vulgaris Cuvier, 1797 for multiplex PCR assay and their cross-amplification in O. maya Voss & Solis Ramirez, 1966. Conservation Genetics Resources 7, 299-301.

Di Cristina, G., Andrews, P., Ponte, G., Galligioni, V. and Fiorito, G. (2015). The impact of Directive 2010/63/EU on cephalopod research. Invertebrate Neuroscience 15, 1-7.

Di Dato, V., Musacchia, F., Petrosino, G., Patil, S., Montresor, M., Sanges, R. and Ferrante, M. I. (2015). Transcriptome sequencing of three Pseudo-nitzschia species reveals comparable gene sets and the presence of Nitric Oxide Synthase genes in diatoms. Sci Rep 5, 12329.

Elphick, M. R., Semmens, D. C., Blowes, L. M., Levine, J., Lowe, C. J., Arnone, M. I. and Clark, M. S. (2015). Reconstructing SALMFamide Neuropeptide Precursor Evolution in the Phylum Echinodermata: Ophiuroid and Crinoid Sequence Data Provide New Insights. Front Endocrinol (Lausanne) 6, 2.

Esposito, R., Racioppi, C., Pezzotti, M. R., Branno, M., Locascio, A., Ristoratore, F. and Spagnuolo, A. (2015). The ascidian pigmented sensory organs: structures and developmental programs. Genesis 53, 15-33.

Fiorito, G., Affuso, A., Basil, J., Cole, A., de Girolamo, P., D'Angelo, L., Dickel, L., Gestal, C., Grasso, F., Kuba, M. Mark, F., Melillo, D., Osorio, D., Perkins, K., Ponte, G., Shashar, N., Smith, D., Smith, J., Andrews, P.L. (2015). Guidelines for the Care and Welfare of Cephalopods in Research -A consensus based on an initiative by CephRes, FELASA and the Boyd Group. Lab Anim 49, 1-90.

Fortunato, A. and Tosti, E. (2015). Sperm Vacuoles and Reproductive Outcome. Journal of Fertilization: In Vitro-IVF-Worldwide, Reproductive Medicine, Genetics & Stem Cell Biology 2015.

Fortunato, A. E., Sordino, P. and Andreakis, N. (2016). Evolution of the SOUL Heme-Binding Protein Superfamily Across Eukarya. J Mol Evol 82, 279-90.

Gallo, A. and Tosti, E. (2015). Antifouling Compounds Endangering Marine Invertebrates Reproduction. J Environ Monit 13, 2360-2388.

Gallo, A. and Tosti, E. (2015). Ion currents involved in gamete physiology. Int J Dev Biol 59, 261-70.

Gallo, A. and Tosti, E. (2015). Reprotoxicity of the antifoulant chlorothalonil in ascidians: an ecological risk assessment. PLoS One 10, e0123074.

Gallo, A. and Tosti, E. (2015). The Ascidian Ciona Intestinalis as Model Organism for Ecotoxicological Bioassays. Journal of Marine Science. Research & Development 5, 1.

Guerriero, E., Capone, F., Accardo, M., Sorice, A., Costantini, M., Colonna, G., Castello, G. and Costantini, S. (2015). GPX4 and GPX7 over-expression in human hepatocellular carcinoma tissues. Eur J Histochem 59, 2540.

Holden-Dye, L., Fiorito, G. and Ponte, G. (2015). Invertebrate neuroscience and CephsInAction at the Mediterranean Society for Neuroscience Meeting Cagliari 2015. Invert Neurosci 15, 6.

Josef, N., Berenshtein, I., Fiorito, G., Sykes, A. V. and Shashar, N. (2015). Camouflage during movement in the European cuttlefish (Sepia officinalis). J Exp Biol 218, 3391-8.

Kumar, A., Castellano, I., Patti, F. P., Palumbo, A. and Buia, M. C. (2015). Nitric oxide in marine photosynthetic organisms. Nitric Oxide 47, 34-9.

Lettieri, A., Esposito, R., Ianora, A. and Spagnuolo, A. (2015). Ciona intestinalis as a marine model system to study some key developmental genes targeted by the diatom-derived aldehyde decadienal. Mar Drugs 13, 1451-65.

Limatola, N., Chun, J. T., Kyozuka, K. and Santella, L. (2015). Novel Ca2+ increases in the maturing oocytes of starfish during the germinal vesicle breakdown. Cell Calcium 58, 500-10.

Mariotti, M., Santesmasses, D., Capella-Gutierrez, S., Mateo, A., Arnan, C., Johnson, R., D'Aniello, S., Yim, S. H., Gladyshev, V. N., Serras, F., Corominas, M., Gabaldón, T., Guigó, R. (2015). Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization. Genome Res 25, 1256-67.

Migliaccio, O., Castellano, I., Cirino, P., Romano, G. and Palumbo, A. (2015). Maternal Exposure to Cadmium and Manganese Impairs Reproduction and Progeny Fitness in the Sea Urchin Paracentrotus lividus. PLoS One 10, e0131815.

Musacchia, F., Basu, S., Petrosino, G., Salvemini, M. and Sanges, R. (2015). Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs. Bioinformatics 31, 2199-201.

Pappalardo, A., Porreca, I., Caputi, L., De Felice, E., Schulte-Merker, S., Zannini, M. and Sordino, P. (2015). Thyroid development in zebrafish lacking Taz. Mech Dev 138 Pt 3, 268-78.

Patil, S., Moeys, S., von Dassow, P., Huysman, M. J., Mapleson, D., De Veylder, L., Sanges, R., Vyverman, W., Montresor, M. and Ferrante, M. I. (2015). Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robustaBMC Genomics 16, 930.

Russo, M. T., Annunziata, R., Sanges, R., Ferrante, M. I. and Falciatore, A. (2015). The upstream regulatory sequence of the light harvesting complex Lhcf2 gene of the marine diatom Phaeodactylum tricornutum enhances transcription in an orientation- and distance-independent fashion. Mar Genomics 24 Pt 1, 69-79.

Santella, L. and Dale, B. (2015). Assisted yes, but where do we draw the line? Reprod Biomed Online 31, 476-8.

Santella, L., Limatola, N. and Chun, J. T. (2015). Calcium and actin in the saga of awakening oocytes. Biochem Biophys Res Commun 460, 104-13.

Stefanni, S., Castilho, R., Sala-Bozano, M., Robalo, J. I., Francisco, S. M., Santos, R. S., Marques, N., Brito, A., Almada, V. C. and Mariani, S. (2015). Establishment of a coastal fish in the Azores: recent colonisation or sudden expansion of an ancient relict population? Heredity 115, 527-37.

Vassalli, Q. A., Anishchenko, E., Caputi, L., Sordino, P., D'Aniello, S. and Locascio, A. (2015). Regulatory elements retained during chordate evolution: coming across tunicates. Genesis 53, 66-81.

Vitale, L., Patil, S., Basu, S., Sanges, R., Ferrante, M. and Montresor, M. (2015). Mating Type related genes in Pseudo-nitzschia multistriataEuropean Journal of Phycology 50, 117-118.

Yazaki, I., Tsurugaya, T., Santella, L., Chun, J. T., Amore, G., Kusunoki, S., Asada, A., Togo, T. and Akasaka, K. (2015). Ca2+ influx-linked protein kinase C activity regulates the beta-catenin localization, micromere induction signalling and the oral-aboral axis formation in early sea urchin embryos. Zygote 23, 426-46.

Zarrella, I., Ponte, G., Baldascino, E. and Fiorito, G. (2015). Learning and memory in Octopus vulgaris: a case of biological plasticity. Curr Opin Neurobiol 35, 74-9.

Zucchelli, S., Cotella, D., Takahashi, H., Carrieri, C., Cimatti, L., Fasolo, F., Jones, M. H., Sblattero, D., Sanges, R., Santoro, C., Persichetti, F., Carninci, P., Gustincich, S. (2015). SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation. RNA Biol 12, 771-9.

Books and/or Book Chapters

Anishchenko, E. and D’Aniello, S. (2015). Tunicate Neurogenesis: The Case of the SoxB2 Missing CNE. In Mathematical Models in Biology: Bringing Mathematics to Life, eds. V. Zazzu B. M. Ferraro and R. M. Guarracino, pp. 99-108. Cham: Springer International Publishing.

Arnone, M. I., Byrne, M. and Martinez, P. (2015). Echinodermata. In Evolutionary Developmental Biology of Invertebrates 6: Deuterostomia, (ed. A. Wanninger), pp. 1-58. Vienna 978-3-7091-1856-6: Springer Vienna.

Gallo, A. and Tosti, E. (2015). Cytoskeletal Elements and the Reproductive Success in Animals. In The Cytoskeleton in Health and Disease, (ed. H. Schatten), pp. 147-166. New York, NY 978-1-4939-2904-7: Springer New York.

Ponte, G. and Fiorito, G. (2015). Immunohistochemical Analysis of Neuronal Networks in the Nervous System of Octopus vulgaris. In Immunocytochemistry and Related Techniques, eds. A. Merighi and L. Lossi), pp. 63-79. New York, NY: Springer New York.


Amato, A., Kooistra, W., Peters, F., Ribera d’Alcalà, M., Sanges, R., Iudicone, D. and Ferrante, M. I. (2015). Isotropic marine microturbulence affects diatom chain composition. In 2015 Aquatic Sciences Meeting,  (ed. A. f. t. S. o. L. a. Oceanography). Granada, Spain.

Castellano, I., Ercolesi, E., Romano, G., Ianora, A. and Palumbo, A. (2015). The diatom-derived aldehyde decadienal affects ERK signaling during metamorphosis of the ascidian Ciona intestinalis, vol. 281, pp. 339-339: WILEY-BLACKWELL 111 RIVER ST, HOBOKEN 07030-5774, NJ USA.

Kumar, A., Patti, F. P., Castellano, I., Delledonne, M., Palumbo, A. and Buia, M. C. (2015). Sargassum vulgare adaptation in acidified waters at natural CO2 vents (Ischia Island, Italy), vol. 50, pp. 195-195: TAYLOR & FRANCIS LTD 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND.

Ruocco, M., Gabriele, P., Musacchia, F., Sanges, R., Olivé, I., Costa, M. M., Barrote, I., Santos, R. and Silva, J. (2015). Cymodocea nodosa response to simulated CO2-driven ocean acidification: a first insight from global transcriptome profiling: PeerJ PrePrints.

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